S. Nigrovic*, A. Paul, S. Maji, A. Ghosh, J. Tran*, P. Luong*, W. J. Rackear*, E. A. Stemmler, K. D. Moulton, S. S. Kulkarni, and D. H. Dube. "Examination of acetylated monosaccharides as metabolic probes in bacteria." ACS Infectious Diseases, in press

A. H. Tang, N. M. Soler, K. I. Karlic, L. Corcilius, C. E. Clarke-Shepperson, C. Lehmann, A. Debowski, A. L. Dale, L. Zavan, M. Cielesh, A. P. Adewale*, K. D. Moulton, L. Li, C. Guan, M. Kaparakis-Liaskos, B. P. Howden, N. L. Sherry, R. Wei, X. Li, R. M. Hall, J. J. Kenyon, L. M. Wakim, C. McCrory, F. L. Short, D. H. Dube, S. J. Cordwell, M. Larance, K. A. Stubbs, Glen P. Carter, N. E. Scott, E. D. Goddard-Borger, R. J. Payne "Uncovering bacterial pseudaminylation with pan-specific antibody tools." Nat. Chem. Biol., accepted in principle
P. Ung*, A. Paul, S. Maji, P. Saavedra-Weis*, K. D. Moulton, S. S. Kulkarni, and D. H. Dube. "Assessing O-naphthylmethyl and O-anthracenemethyl glycosides as metabolic innhibitors of bacterial glycan biosynthesis." ACS Infectious Diseases, 2025, https://doi.org/10.1021/acsinfecdis.5c00559

D. Bhargava*, A. Chowdhury*, and D. H. Dube. "Chemical tools to study and modulate glycan-mediated host-bacteria interactions." Current Opinion in Chemical Biology, 2025, 87, https://doi.org/10.1016/j.cbpa.2025.102603

K. A. Barrett*, F. J. Kassama*, W. Surks*, A. Mulholland*, K. D. Moulton, and D. H. Dube. "Helicobacter pylori glycan biosynthesis modulates host recognition and response." Fronteirs in Cellular and Infection Microbiology, 2024, 14, https://doi.org/10.3389/fcimb.2024.1377077

D. Calles-Garcia and D. H. Dube. "Chemical biology tools to probe bacterial glycans." Current Opinion in Chemical Biology, 2024, 80, https://doi.org/10.1016/j.cbpa.2024.102453



I. Quintana,* A. Paul, A. Chowdhury,* K. D. Moulton, S. S. Kulkarni, and D. H. Dube. "Thioglycosides act as metabolic inhibitors of bacterial glycan biosynthesis." ACS Infectious Diseases., 2023, 9, 2025-2035. https://doi.org/10.1021/acsinfecdis.3c00324


K. Barrett* and D. H. Dube. "Chemical tools to study bacterial glycans: a tale from discovery of glycooproteins to disruption of their function." Israel J. Chem., 2022, https://doi.org/10.1002/ijch.202200050

P. Luong,* A. Ghosh, K. D. Moulton, S. S. Kulkarni, and D. H. Dube. "Synthesis and application of rare deoxy amino L-sugar analogs to probe glycans in pathogenic bacteria." ACS Infectious Diseases., 2022, 8, 889-900.

P. Luong* and D. H. Dube. "Dismantling the bacterial glycocalyx: chemical tools to probe, perturb, and image bacterial glycans." Bioorg. Med. Chem., 2021, 42, 116268.

K. D. Moulton, A. P. Adewale*, H. A. Carol*, S. A. Mikami*, and D. H. Dube. "Metabolic glycan labeling-based screen to identify bacterial glycosylation genes." ACS Infectious Diseases, 2020, 6, 3247-3259.

D. A. Williams*†, K. Pradhan†, A. Paul, I. R. Olin*, O. T. Tuck*, K. D. Moulton, S. S. Kulkarni, and D. H. Dube. "Metabolic inhibitors of bacterial glycan biosynthesis." Chemical Science, 2020, 11, 1761-1774.

D. H. Dube, D. A. Williams*, "Metabolic glycan engineering in live animals: using bioorthogonal chemistry to alter cell surface glycans." In Handbook of in vivo chemistry in mice: from flask to animal, K. Tanaka, K. Vong eds., Wiley-VCH (Germany), 2020, https://doi.org/10.1002/9783527344406.ch8
T. D. Epstein*†, B. Wu†, K. D. Moulton, M. Yan, D. H. Dube, "Sugar-modified auranofin analogs are potent inhibitors of the gastric pathogen Helicobacter pylori" ACS Infectious Diseases, 2019, 5, 1682-1687.

D. H. Dube, "Design of a drug discovery course for non-science majors" Biochem. Mol. Biol. Educ., 2018, 46, 327-335.

E. L. Clark*, M. Emmadi, K. L. Krupp*, A. R. Podilapu, J. D. Helble*, S. S. Kulkarni, and D. H. Dube, "Development of rare bacterial monosaccharide analogs for metabolic glycan labeling in pathogenic bacteria" ACS Chem. Biol., 2016, 11, 3365-3373.

K. R. Farnham and D. H. Dube, "A semester-long project-oriented biochemistry laboratory based on Helicobacter pylori urease" Biochem. Mol. Biol. Educ., 2015, 43, 333-340.
V. Tra* and D. H. Dube, "Chemical tools to detect and target Helicobacter pylori's glycoproteins" In Glycoscience: Biology and Medicine, T. Endo, P. Seeberger, G. Hart, C-H Wong, N. Taniguchi, ed., Springer (Japan), 2014.
V. Tra* and D. H. Dube, "Glycans in pathogenic bacteria -- potential for targeted covalent therapeutics and imaging agents," Chem. Commun., 2014, 50, 4659-4673.

K. Champasa*†, S. A. Longwell*†, A. M. Eldridge, E. A. Stemmler and D. H. Dube, "Targeted identification of glycosylated proteins in the gastric pathogen Helicobacter pylori", Mol. Cell. Proteomics, 2013, 12, 2588-2586.

P. Kaewsapsak*, O. Esonu*, and D. H. Dube, "Recruiting the host's immune system to target Helicobacter pylori's surface glycans", ChemBioChem, 2013, 14, 721-726

S. A. Longwell* and D. H. Dube, "Deciphering the bacterial glycocode: recent advances in bacterial glycoproteomics", Curr. Opin. Chem. Biol., 2013, 17, 41-48

D. H. Dube. "Metabolic labeling of bacterial glycans with chemical reporters." In Bacterial glycomics: Current research, technology, and applications. Twine, S. M., ed. Horizon Scientific Press, Norfolk (UK), 2012
D. H. Dube†, B. Li†, E. J. Greenblatt, S. Nimer, A. K. Raymond* and J. J. Kohler, "A two-hybrid assay to study interactions within the secretory pathway", PLOS One, 2010, 5, e15648. [† These authors contributed equally to this work.]
D. H. Dube, K. Champasa* and B. Wang*, "Chemical tools to discover and target bacterial glycoproteins",Chem. Commun., 2011, 47, 87-101.

P. V. Chang, D. H. Dube and C. R. Bertozzi, "A strategy for the selective imaging of glycans using caged metabolic precursors", J. Am. Chem. Soc., 2010, 132, 9516-9518.

M. B. Koenigs*, E. A. Richardson* and D. H. Dube, "Metabolic profiling of Helicobacter pylori glycosylation",Mol. BioSyst., 2009, 5, 909-912.

D. H. Dube, C. L. De Graffenried and J. J. Kohler, “Regulating cell surface glycosylation with a small-molecule switch”, Meth. Enzymol., 2006, 415, 213-229.
D. H. Dube†, J. A. Prescher†, C. N. Quang* and C. R. Bertozzi, “Probing mucin-type O-linked glycosylation in living animals”, Proc. Nat’l Acad. Sci. USA, 2006, 103, 4819-4824. [†These authors contributed equally to this work.]

D. H. Dube and C. R. Bertozzi, “Glycans in cancer and inflammation: potential for therapeutics and diagnostics”, Nat. Rev. Drug Disc., 2005, 4, 477-488.
J. A. Prescher†, D. H. Dube†, and C. R. Bertozzi, “Chemical remodeling of cell surfaces in living animals”Nature, 2004, 430, 873-877. [†These authors contributed equally to this work.]

D. H. Dube and C. R. Bertozzi, “Metabolic oligosaccharide engineering as a tool for glycobiology”, Curr. Opin. Chem. Biol., 2003, 7, 1-10.
S. J. Luchansky, H. C. Hang, E. Saxon, J. R. Grunwell, C. Yu, D. H. Dube and C. R. Bertozzi, “Constructing azide-labeled cell surfaces using polysaccharide biosynthetic pathways”, Meth. Enzymol., 2003, 362, 249-272.
*indicates undergraduate co-author, †These authors contributed equally to this work.